如何快速找到某个基因的结构域和保守位点

Query 你输入的序列ID Hit type CD-Search results can include hit typesthat represent various confidence levels (specific hits, non-specific hits) and domain model scope (superfamilies, multi-domains). They can be seen in both the Concise display and Full display, except for non-specific hits, which are shown only in the Full Display. PSSM-ID A PSSM IDis the unique identifier for a domain model's position-specific scoring matrix (PSSM). From..To The range of amino acids in the query protein sequenceto which the domain model aligns. (Note: If the alignment found by RPS-BLAST omitted more than 20% of the CD's extent at either the n- or c-terminus or both, the partial nature of the hit is indicated in the 'Incomplete' column of the hit table. Partial hits can also be spotted in the graphical display as domain model cartoons with jagged edges (illustrated example).) E-value The expect value, or E-value, indicates the statistical significance of the hit as the likelihood the hit was found by chance. Bit Score 比对得分分 Accession The accession number of the hit, which can either be a domain model or a superfamily cluster. (If the hit is a domain model, then the accession number (cl*) of the superfamily cluster to which it belongs is listed in the 'Superfamily' column of the output file.) Short name The short name of a conserved domain, which concisely defines the domain. For example, 'Voltage gated ClC' is the short title of the NCBI-curated conserved domain model for the voltage gated chloride channel (cd00400). Incomplete If the hit to a conserved domain is partial(i.e., if the alignment found by RPS-BLAST omitted more than 20% of the CD's extent at either the n- or c-terminus or both), this column will be populated with one of the following values:N: incomplete at the N-terminus C: incomplete at the C-terminus NC: incomplete at both the N-terminus and C-terminusIf the hit to a conserved domain is complete, then this column will be populated with a dash(-).(Note: Partial hits can also be spotted in the graphical display as domain model cartoons with jagged edges (illustrated example).) Superfamily This column is populated only for domain models that are specific or non-specific hits, and it lists the accession number of the superfamily to which the domain model belongs.(If the hit is to a superfamily itself, then this column is simply populated with a dash because the superfamily accession is already listed in the preceding 'Accession' column.)