EMBL-EBI生物信息学培训界领头羊
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High-throughput sequencing technology Quality control of raw reads: FASTQC and fastx toolkit Considerations on experiment design for RNA-seq Read pseudoalignment and quantification: kallisto, salmon Differential expression analysis and differential exon usage: R, edgeR, DESeq2, DEXSeq Downstream DE data processing and gene target discovery Single cell RNA-seq analysis: scran, scater
Day 1: UniProtKB, InterPro, HMMER Day 2: PDBe, EMDB, EMPIAR Day 3: IntAct, Complex Portal, Reactome
Mass Spectrometry Basics MS Search Engines and post-processing software Quantitative proteomics Protein sequence databases and their use Protein sequence data in UniProt Post-translational modifications Standardisation of proteomics data MS proteomics repositories and the ProteomeXchange consortium PRIDE and PRIDE-related tools Proteogenomics Protein interaction data through IntAct and the IMEX consortium Functional analysis of proteins using Cytoscape Placing proteins in pathways using Reactome
Fundamentals of metabolomics experimental design Basic concepts of metabolomics data analysis Availability of opensource tools available for metabolomics data analysis How to combine tools to create an analysis workflow
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